MirGeneDB 3.0

MirGeneDB ID

Dre-Novel-8

Family name DRE-NOVEL-8 (all species)
Seed AAAUAAU
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) D. rerio
Node of Origin (family) D. rerio
Genome context
(danRer11)
chr4: 6920268-6920338 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUUUCUCUCAAGUUUGUUGAUUUAUUAGAAAAUAAUGGUCACCCGAGGUGUAACAGCCACUCCGCUUCGCAUCAGCACCUCGGGUGUACAUUAUCAUCUAUUAAUUACAACAACCCAUCAUCAGUUAUU
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Structure
        10         20         30        40        50        60     
UGAUUUCUCUCAAGUUU-    AU-|  U    AA      GU            AACAGCCACUC 
                  GUUG   UUA UAGA  AUAAUG  CACCCGAGGUGU           \
                  CAAC   AAU AUCU  UAUUAC  GUGGGCUCCACG           C
UUAUUGACUACUACCCAA    AUU^  U    AC      AU            ACUACGCUUCG 
 .       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Novel-8_5p

mirBase accessionNone
Sequence
0- AAAAUAAUGGUCACCCGAGGUGU -23
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Star sequence

Dre-Novel-8_3p*

mirBase accessionNone
Sequence
48- ACCUCGGGUGUACAUUAUCAUCU -71
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