MirGeneDB ID | Dsi-Mir-966 |
Family name |
MIR-966 (all species) |
Seed |
GUGGGCU |
Species |
Fruit fly (Drosophila simulans) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dme-Mir-966
Dya-Mir-966
|
Node of Origin (locus) |
D. melanogaster subgroup
|
Node of Origin (family) |
D. melanogaster subgroup
|
Genome context (Drosophila_simulans.ASM75419v3.dna.toplevel) |
2L: 5841006-5841062 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCGGCUGUAACCUGAUCCGCUGCUGUGGGCUGUGGGCUGUGGGCUGUAAGGCUGUGGUAUAGGUGCCGCCAGUUGAUAACCCCCAGCGUGGGCACGGCCCCACUGGUCGUCAACCGC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCGGCUGUAACCUGAUCC- C --|G U C G UAA UGUGG
GCUG UGU G GCUG GGG UGU GGCUG GGC U
CGGC ACG U CGAC CCC AUA UUGAC CCG A
CGCCAACUGCUGGUCACCC - GG^G C A G CG- UGGAU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Dsi-Mir-966_5p |
mirBase accession | None |
Sequence |
0- UGUGGGCUGUGGGCUGUAAGGCU -23
Get sequence
|
Star sequence |
Dsi-Mir-966_3p* |
mirBase accession | None |
Sequence |
35- CCGCCAGUUGAUAACCCCCAGC -57
Get sequence
|