Mir-133-P5b-v1

MirGeneDB ID

Ebu-Mir-133-P5b-v1

Family name

MIR-133 (all species)

Seed

UUGGUCC

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-133-P5a-v1 Ebu-Mir-133-P5a-v2 Ebu-Mir-133-P5b-v2 Ebu-Mir-133-P6a-v1 Ebu-Mir-133-P6a-v2 Ebu-Mir-133-P6b-v1 Ebu-Mir-133-P6b-v2 Ebu-Mir-133-P7-v1 Ebu-Mir-133-P7-v2 Ebu-Mir-133-P8-v1 Ebu-Mir-133-P8-v2

Orthologues

Aae-Mir-133 Aga-Mir-133 Asu-Mir-133 Bge-Mir-133 Cbr-Mir-133 Cel-Mir-133 Cin-Mir-133 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Isc-Mir-133 Lan-Mir-133 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Mgi-Mir-133 Mom-Mir-133 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pau-Mir-133 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pve-Mir-133 Rph-Mir-133 Sma-Mir-133 Snu-Mir-133 Spu-Mir-133 Tca-Mir-133 Tur-Mir-133 War-Mir-133 Xbo-Mir-133

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02010259.1: 2013374-2013433 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAAUGCUCAUGUCAAGGAUGCUUUGCAGUUGCUGGUCAAACGGAACCAAAUCGUGGUCUACGAUGGUUUGGUCCCCUUCAACCAGCUGCAGCCUAGCACAGUGACUCACGAUCGCCUUU

Get precursor sequence

Structure

        10          20        30        40        50         
GCAAUGCUCAUGUCAAGGA--|   UU  A  U      CA  C  A        GUGGU 
                     UGCU  GC GU GCUGGU  AA GG ACCAAAUC     C
                     ACGA  CG CG CGACCA  UU CC UGGUUUGG     U
UUUCCGCUAGCACUCAGUGAC^   UC  A  U      AC  C  C        UAGCA 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

To

Star sequence

Ebu-Mir-133-P5b-v1_5p* (predicted)

mirBase accession

None

Sequence

0- UGCUGGUCAAACGGAACCAAAUC -23

Get sequence

Mature sequence

Ebu-Mir-133-P5b-v1_3p

mirBase accession

None

Sequence

37- UUUGGUCCCCUUCAACCAGCUGC -60

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