| MirGeneDB ID | Ebu-Mir-138-P3 |
|---|
| Family name |
MIR-138 (all species) |
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| Seed |
GCUGGUG |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-138-P4
|
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| Orthologues |
Pma-Mir-138-o3
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02010311.1: 2672414-2672470 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUGCAAAAUCGACAAAAGGAGCUGCGCUGCAGCUGGUGUUGUGAAUCAGGCCGUGGAAUGAUUCCGACCGUUUCGCGACACCAGGGCUGUGCUGCUCUACUAGCAGCGAUAGCAGCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGCAAAAUCGACAAAA--| U U AG UCA C UGGAA
GGAGC GCGC GC CUGGUGUUGUGAA GG CG \
UCUCG CGUG CG GACCACAGCGCUU CC GC U
UCGACGAUAGCGACGAUCA^ U U G- UG- A CUUAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Here the single read of the 3p arm has a untemplated adenosine. |
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ebu-Mir-138-P3_5p |
| mirBase accession | None |
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| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-138-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- ACCGUUUCGCGACACCAGGGC -57
Get sequence
|
|---|
