MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-138-o3

Family name MIR-138 (all species)
Seed GCUGGUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-138b
Paralogues Pma-Mir-138-o1  Pma-Mir-138-o2 
Orthologues Ebu-Mir-138-P3 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046113.1: 8496747-8496809 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGGCCCCCGCCACUUGGUGCCGUGCCGCAGCUGGUGUUGUGAAUCAGGCUGAUCCUCUCCUGCUCCUCCGCCGCUUCACAGCACCGGCACGGCACGGCCGCCGCAUCGCCACUGUGCAUCG
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Structure
        10          20         30        40        50        60 
CGGGGCCCCCGCCACUU--   -|        CA              UCA   U AUCCUCU 
                   GGU GCCGUGCCG  GCUGGUGUUGUGAA   GGC G       C
                   CCG CGGCACGGC  CGGCCACGACACUU   CCG C       C
GCUACGUGUCACCGCUACG   C^        A-              CG-   C UCCUCGU 
 120       110       100         90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-138-o3_5p

mirBase accessionMIMAT0019470
Sequence
0- AGCUGGUGUUGUGAAUCAGGCUG -23
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Star sequence

Pma-Mir-138-o3_3p* (predicted)

mirBase accessionNone
Sequence
41- GCCGCUUCACAGCACCGGCACG -63
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