MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-138-o1

Family name MIR-138 (all species)
Seed GCUGGUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-138a
Paralogues Pma-Mir-138-o2  Pma-Mir-138-o3 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cja-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Eca-Mir-138-P1  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Gmo-Mir-138-P1b  Hsa-Mir-138-P1  Laf-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mal-Mir-138-P1b  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmr-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Neu-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pab-Mir-138-P1  Pbv-Mir-138-P1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xla-Mir-138-P1c  Xla-Mir-138-P1d  Xtr-Mir-138-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046122.1: 1115167-1115233 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCUUCCCUCCAUCACGGUGGCCGGCGGCAGCUGGUGUUGUGAAUCAGGCCGGUGGCGCAGCCCCUAGACACACGGCUGUUUCACUACAGCAGGGUCGCAUGCCACCACCGCCACCACCGCCGUGU
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Structure
        10          20        30        40        50        60    
GGCCUUCCCUCCAUCAC--|     CG     AG   G   U     UCA     GUGGCGCAGC 
                   GGUGGC  GCGGC  CUG UGU GUGAA   GGCCG          \
                   CCACCG  CGCUG  GAC ACA CACUU   UCGGC          C
UGUGCCGCCACCACCGCCA^     UA     G-   G   U     UG-     ACACAGAUCC 
     120       110       100         90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-138-o1_5p
mirBase accessionMIMAT0019469
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Pma-Mir-138-o1_3p* (predicted)
mirBase accessionNone
Sequence 
45- GGCUGUUUCACUACAGCAGGGU -67
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