MirGeneDB ID | Gmo-Mir-138-P1b |
Family name |
MIR-138 (all species) |
Seed |
GCUGGUG |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-138-2
|
Paralogues |
Gmo-Mir-138-P1a
Gmo-Mir-138-P2
|
Orthologues |
Aca-Mir-138-P1
Ami-Mir-138-P1
Bta-Mir-138-P1
Cfa-Mir-138-P1
Cja-Mir-138-P1
Cli-Mir-138-P1
Cmi-Mir-138-P1
Cpo-Mir-138-P1
Dno-Mir-138-P1
Eca-Mir-138-P1
Ete-Mir-138-P1
Gga-Mir-138-P1
Gja-Mir-138-P1
Hsa-Mir-138-P1
Laf-Mir-138-P1
Lch-Mir-138-P1
Loc-Mir-138-P1
Mal-Mir-138-P1b
Mdo-Mir-138-P1
Mml-Mir-138-P1
Mmr-Mir-138-P1
Mmu-Mir-138-P1
Mun-Mir-138-P1
Neu-Mir-138-P1
Oan-Mir-138-P1
Ocu-Mir-138-P1
Pab-Mir-138-P1
Pbv-Mir-138-P1
Pma-Mir-138-o1
Rno-Mir-138-P1
Sha-Mir-138-P1
Spt-Mir-138-P1
Sto-Mir-138-P1
Tgu-Mir-138-P1
Xtr-Mir-138-P1
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_896: 27322-27382 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAACAAUGUCAACAUGGGUGAGGAGGGUCAGCUGGUGUUGUGAAUCAGGCCGCUGAAGAGACACGUACGGCUUUUUCACAACGCCAGGGUCCCUCUCUCCCACUUACGGCUAAUGAGAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCAACAAUGUCAACAUG--| U - UCAG UC CUGAAGA
GG GAG GAGGG CUGGUGUUGUGAA AGGCCG \
CC CUC CUCCC GACCGCAACACUU UUCGGC G
UUAGAGUAAUCGGCAUUCA^ - U UGG- U- AUGCACA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-138-P1b_5p |
mirBase accession | MIMAT0044223 |
Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
Star sequence |
Gmo-Mir-138-P1b_3p* |
mirBase accession | MIMAT0044320 |
Sequence |
40- GCUUUUUCACAACGCCAGGGU -61
Get sequence
|