MirGeneDB ID | Pab-Mir-138-P1 |
---|---|
Family name | MIR-138 (all species) |
Seed | GCUGGUG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-138-P2 |
Orthologues | Aca-Mir-138-P1 Ami-Mir-138-P1 Bta-Mir-138-P1 Cfa-Mir-138-P1 Cja-Mir-138-P1 Cli-Mir-138-P1 Cmi-Mir-138-P1 Cpo-Mir-138-P1 Dno-Mir-138-P1 Dre-Mir-138-P1a Eca-Mir-138-P1 Ete-Mir-138-P1 Gga-Mir-138-P1 Gja-Mir-138-P1 Gmo-Mir-138-P1a Gmo-Mir-138-P1b Hsa-Mir-138-P1 Laf-Mir-138-P1 Lch-Mir-138-P1 Loc-Mir-138-P1 Mal-Mir-138-P1a Mal-Mir-138-P1b Mdo-Mir-138-P1 Mml-Mir-138-P1 Mmr-Mir-138-P1 Mmu-Mir-138-P1 Mun-Mir-138-P1 Neu-Mir-138-P1 Oan-Mir-138-P1 Ocu-Mir-138-P1 Pbv-Mir-138-P1 Pma-Mir-138-o1 Rno-Mir-138-P1 Sha-Mir-138-P1 Spt-Mir-138-P1 Sto-Mir-138-P1 Tgu-Mir-138-P1 Tni-Mir-138-P1a Xla-Mir-138-P1c Xla-Mir-138-P1d Xtr-Mir-138-P1 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM068843.1: 110381952-110382012 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AGAGACCUCCCUGGCAUGGUGUGGUGGGGCAGCUGGUGUUGUGAAUCAGGCCGUUGCCAAUCAGAGAACGGCUACUUCACAACACCAGGGCCACACCACACUACAGACAGCAUUCCAGCUUGet precursor sequence |
Structure | 10 20 30 40 50 60 AGAGACCUCCCUGGCAU--| G AG UCA UUGCCAA GGUGUGGUG GGC CUGGUGUUGUGAA GGCCG \ UCACACCAC CCG GACCACAACACUU UCGGC U UUCGACCUUACGACAGACA^ A G- CA- AAGAGAC . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Pab-Mir-138-P1_5p |
mirBase accession | None |
Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
Star sequence | Pab-Mir-138-P1_3p* |
mirBase accession | None |
Sequence |
40- GCUACUUCACAACACCAGGGC -61
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|