MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-138-P1d

Family name MIR-138 (all species)
Seed GCUGGUG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-138-2
Paralogues Xla-Mir-138-P1c 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cja-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Eca-Mir-138-P1  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Hsa-Mir-138-P1  Laf-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmr-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Neu-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pab-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Xtr-Mir-138-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030735.1: 42121469-42121529 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACUUUGUAAGGAACUUGGUGGGGCGCAGCAGCUGGUGUUGUGAAUCAGGCCGUGACCACUGAGAAAACGGCUACUUCACAACACCAGGGUCGCUUCUCACCUCUGUCAGCAUGUGGACAU
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Structure
        10          20        30        40        50        60 
AACUUUGUAAGGAACUU--|      C  A  AG             UCA     UGACCAC 
                   GGUGGGG GC GC  CUGGUGUUGUGAA   GGCCG       \
                   CCACUCU CG UG  GACCACAACACUU   UCGGC       U
UACAGGUGUACGACUGUCU^      U  C  G-             CA-     AAAAGAG 
 .       110       100        90         80         70
Deep sequencing
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-138-P1d_5p
mirBase accessionMIMAT0046449
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Xla-Mir-138-P1d_3p*
mirBase accessionMIMAT0046450
Sequence 
40- GCUACUUCACAACACCAGGGU -61
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