Mir-138-P1

MirGeneDB ID

Mmu-Mir-138-P1

Family name

MIR-138 (all species)

Seed

GCUGGUG

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-138-1

Paralogues

Mmu-Mir-138-P2

Orthologues

Aca-Mir-138-P1 Ami-Mir-138-P1 Bta-Mir-138-P1 Cfa-Mir-138-P1 Cli-Mir-138-P1 Cmi-Mir-138-P1 Cpo-Mir-138-P1 Dno-Mir-138-P1 Dre-Mir-138-P1a Ete-Mir-138-P1 Gga-Mir-138-P1 Gja-Mir-138-P1 Gmo-Mir-138-P1a Gmo-Mir-138-P1b Hsa-Mir-138-P1 Lch-Mir-138-P1 Loc-Mir-138-P1 Mal-Mir-138-P1a Mal-Mir-138-P1b Mdo-Mir-138-P1 Mml-Mir-138-P1 Mun-Mir-138-P1 Oan-Mir-138-P1 Ocu-Mir-138-P1 Pbv-Mir-138-P1 Pma-Mir-138-o1 Rno-Mir-138-P1 Sha-Mir-138-P1 Spt-Mir-138-P1 Sto-Mir-138-P1 Tgu-Mir-138-P1 Tni-Mir-138-P1a Xla-Mir-138-P1c Xla-Mir-138-P1d Xtr-Mir-138-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr9: 122682898-122682958 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAGAGACCUCUAGCAUGGUGUUGUGGGACAGCUGGUGUUGUGAAUCAGGCCGUUGCCAAUCAGAGAACGGCUACUUCACAACACCAGGGCCACACUGCACUGCAAGCAGCGAGCAGCAAG

Get precursor sequence

Structure

        10          20         30        40        50        60 
UCAGAGACCUCUAGCAU--     U   -| ACAG             UCA     UUGCCAA 
                   GGUGU GUG GG    CUGGUGUUGUGAA   GGCCG       \
                   UCACG CAC CC    GACCACAACACUU   UCGGC       U
GAACGACGAGCGACGAACG     U   A^ GG--             CA-     AAGAGAC 
 .       110       100        90          80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

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Mature sequence

Mmu-Mir-138-P1_5p

mirBase accession

MIMAT0000150

Sequence

0- AGCUGGUGUUGUGAAUCAGGCCG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000150
TargetScanVert: mmu-miR-138-5p
miRDB: MIMAT0000150

Star sequence

Mmu-Mir-138-P1_3p*

mirBase accession

MIMAT0004668

Sequence

40- GCUACUUCACAACACCAGGGC -61

Get sequence

Proposed targets

microrna.org: MIMAT0004668
TargetScanVert: mmu-miR-138-1-3p
miRDB: MIMAT0004668