MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-138-P1a

Family name MIR-138 (all species)
Seed GCUGGUG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-138-3
Paralogues Gmo-Mir-138-P1b  Gmo-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cja-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Eca-Mir-138-P1  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Hsa-Mir-138-P1  Laf-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmr-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Neu-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pab-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xtr-Mir-138-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_3530: 55998-56058 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCCACCUGGUGGCUUGGUACGGUGGGACAGCUGGUGUUGUGAAUCAGGCCGCCACAAUGCCCGGACCGGCUCCUUCCCAACACCAGGGUCUCACCGUCGCCCCUCUCUCCUAUCACCGU
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Structure
        10         20         30        40        50        60 
CUGCCACCUGGUGGCUU-   -|         AG         U   UCA     CCACAAU 
                  GGU ACGGUGGGAC  CUGGUGUUG GAA   GGCCG       \
                  CCG UGCCACUCUG  GACCACAAC CUU   UCGGC       G
UGCCACUAUCCUCUCUCC   C^         G-         C   CC-     CAGGCCC 
 .       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-138-P1a_5p
mirBase accessionMIMAT0044223
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Gmo-Mir-138-P1a_3p*
mirBase accessionMIMAT0044224
Sequence 
40- GCUCCUUCCCAACACCAGGGU -61
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