MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-138-P1

Family name MIR-138 (all species)
Seed GCUGGUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Eca-Mir-138-P1  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Gmo-Mir-138-P1b  Hsa-Mir-138-P1  Laf-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mal-Mir-138-P1b  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmr-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Neu-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pab-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xla-Mir-138-P1c  Xla-Mir-138-P1d  Xtr-Mir-138-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021929.1: 20654376-20654436 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGACCUCCCCAGCAUGGUGUGGUGGGGCAGCUGGUGUUGUGAAUCAGGCCGUUGCCAAUCAGAGAACGGCUACUUCACAACACCAGGGCCGCACCACACUACAGGCGGCAUUCUGGCUC
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Structure
        10          20        30        40        50        60 
AGAGACCUCCCCAGCAU--|        G   AG             UCA     UUGCCAA 
                   GGUGUGGUG GGC  CUGGUGUUGUGAA   GGCCG       \
                   UCACACCAC CCG  GACCACAACACUU   UCGGC       U
CUCGGUCUUACGGCGGACA^        G   G-             CA-     AAGAGAC 
 .       110       100        90         80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-138-P1_5p
mirBase accessionNone
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Cja-Mir-138-P1_3p* (predicted)
mirBase accessionNone
Sequence 
40- GCUACUUCACAACACCAGGGC -61
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