| MirGeneDB ID | Cja-Mir-138-P2 |
|---|---|
| Family name | MIR-138 (all species) |
| Seed | GCUGGUG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-138-P1 |
| Orthologues | Aca-Mir-138-P2 Ami-Mir-138-P2 Bta-Mir-138-P2 Cfa-Mir-138-P2 Cli-Mir-138-P2 Cmi-Mir-138-P2 Cpi-Mir-138-P2 Cpo-Mir-138-P2 Dno-Mir-138-P2 Dre-Mir-138-P2 Eca-Mir-138-P2 Ete-Mir-138-P2 Gga-Mir-138-P2 Gja-Mir-138-P2 Gmo-Mir-138-P2 Hsa-Mir-138-P2 Laf-Mir-138-P2 Lch-Mir-138-P2 Loc-Mir-138-P2 Mal-Mir-138-P2 Mdo-Mir-138-P2 Mml-Mir-138-P2 Mmr-Mir-138-P2 Mmu-Mir-138-P2 Neu-Mir-138-P2 Oan-Mir-138-P2 Ocu-Mir-138-P2 Pab-Mir-138-P2 Pbv-Mir-138-P2 Pma-Mir-138-o2 Rno-Mir-138-P2 Sha-Mir-138-P2 Spt-Mir-138-P2 Sto-Mir-138-P2 Tgu-Mir-138-P2 Tni-Mir-138-P2 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021934.1: 11393927-11393997 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAGCCGGCGGAGUUCUGGUAUCGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACGAGCAGCGCAUCCUCUUACCCGGCUAUUUCACGACACCAGGGUUGCAUCAUACCCAUCCUCUCCAGGCGAGCCUCGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAGCCGGCGGAGUUCUG------| CGU U AG UCA ACGAGCAGCG GUAU UGC GC CUGGUGUUGUGAA GGCCG C CAUA ACG UG GACCACAGCACUU UCGGC A GCUCCGAGCGGACCUCUCCUACC^ CU- U G- UA- CCAUUCUCCU . 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | Although usually templated it is assummed that Mir-138-P2 is often a Group 2 miRNA given the available 3' DcRNA reads as well as a mutation in python and some of the fish at the very 3' terminus that supports the terminal addition of the 3' uridine. |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Cja-Mir-138-P2_5p |
| mirBase accession | None |
| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
| Star sequence | Cja-Mir-138-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
47- GCUAUUUCACGACACCAGGGUUGC -71
Get sequence
|
