| MirGeneDB ID | Spt-Mir-138-P2 |
|---|---|
| Family name | MIR-138 (all species) |
| Seed | GCUGGUG |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-138-P1 |
| Orthologues | Aca-Mir-138-P2 Ami-Mir-138-P2 Bta-Mir-138-P2 Cfa-Mir-138-P2 Cja-Mir-138-P2 Cli-Mir-138-P2 Cmi-Mir-138-P2 Cpi-Mir-138-P2 Cpo-Mir-138-P2 Dno-Mir-138-P2 Dre-Mir-138-P2 Eca-Mir-138-P2 Ete-Mir-138-P2 Gga-Mir-138-P2 Gja-Mir-138-P2 Gmo-Mir-138-P2 Hsa-Mir-138-P2 Laf-Mir-138-P2 Lch-Mir-138-P2 Loc-Mir-138-P2 Mal-Mir-138-P2 Mdo-Mir-138-P2 Mml-Mir-138-P2 Mmr-Mir-138-P2 Mmu-Mir-138-P2 Neu-Mir-138-P2 Oan-Mir-138-P2 Ocu-Mir-138-P2 Pab-Mir-138-P2 Pbv-Mir-138-P2 Pma-Mir-138-o2 Rno-Mir-138-P2 Sha-Mir-138-P2 Sto-Mir-138-P2 Tgu-Mir-138-P2 Tni-Mir-138-P2 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011631.1: 235694-235761 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCCCGGCAAAGCAUAAGGUAUCGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACAACAAGCGCAUCCUACUAUCCGGCUAUUUCACUACACCAGGGUUGCAUCAUACCACUCACCUACACUACACCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCCCGGCAAAGCAUAAG---| CGU U AG U UCA ACAACAAGCG GUAU UGC GC CUGGUGU GUGAA GGCCG C CAUA ACG UG GACCACA CACUU UCGGC A ACCACAUCACAUCCACUCAC^ CU- U G- U UA- CUAUCAUCCU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-138-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
| Star sequence | Spt-Mir-138-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
47- GCUAUUUCACUACACCAGGGU -68
Get sequence
|
