MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-138-P2

Family name MIR-138 (all species)
Seed GCUGGUG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-138-P1 
Orthologues Aca-Mir-138-P2  Ami-Mir-138-P2  Bta-Mir-138-P2  Cfa-Mir-138-P2  Cja-Mir-138-P2  Cli-Mir-138-P2  Cmi-Mir-138-P2  Cpi-Mir-138-P2  Cpo-Mir-138-P2  Dno-Mir-138-P2  Dre-Mir-138-P2  Eca-Mir-138-P2  Ete-Mir-138-P2  Gga-Mir-138-P2  Gmo-Mir-138-P2  Hsa-Mir-138-P2  Laf-Mir-138-P2  Lch-Mir-138-P2  Loc-Mir-138-P2  Mal-Mir-138-P2  Mdo-Mir-138-P2  Mml-Mir-138-P2  Mmr-Mir-138-P2  Mmu-Mir-138-P2  Neu-Mir-138-P2  Oan-Mir-138-P2  Ocu-Mir-138-P2  Pab-Mir-138-P2  Pbv-Mir-138-P2  Pma-Mir-138-o2  Rno-Mir-138-P2  Sha-Mir-138-P2  Spt-Mir-138-P2  Sto-Mir-138-P2  Tgu-Mir-138-P2  Tni-Mir-138-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015172574.1: 686293-686360 [+]
Precursor
(pre-Mir +30nt flank)
CCUGGCUGAAGUCACGGGUAUCGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACAAAAAGCGCAUCUUACUAUCCGGCUAUUUCACUACACCAGGGUUGCAUCAUACCACUCGCCUUCCCUGCACAU
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Structure
        10           20        30        40        50        60    
CCUGGCUGAAGUCACGG---|   CGU   U  AG       U     UCA     ACAAAAAGCG 
                    GUAU   UGC GC  CUGGUGU GUGAA   GGCCG          C
                    CAUA   ACG UG  GACCACA CACUU   UCGGC          A
UACACGUCCCUUCCGCUCAC^   CU-   U  G-       U     UA-     CUAUCAUUCU 
      120       110        100         90         80        70
Deep sequencing
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CommentAlthough usually templated it is assummed that Mir-138-P2 is often a Group 2 miRNA given the available 3' DcRNA reads as well as a mutation in python and some of the fish at the very 3' terminus that supports the terminal addition of the 3' uridine.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-138-P2_5p
mirBase accessionNone
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Gja-Mir-138-P2_3p*
mirBase accessionNone
Sequence 
47- GCUAUUUCACUACACCAGGGU -68
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