MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-138-P2

Family name MIR-138 (all species)
Seed GCUGGUG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-138-P1 
Orthologues Aca-Mir-138-P2  Ami-Mir-138-P2  Bta-Mir-138-P2  Cfa-Mir-138-P2  Cja-Mir-138-P2  Cli-Mir-138-P2  Cmi-Mir-138-P2  Cpi-Mir-138-P2  Cpo-Mir-138-P2  Dno-Mir-138-P2  Dre-Mir-138-P2  Eca-Mir-138-P2  Ete-Mir-138-P2  Gga-Mir-138-P2  Gja-Mir-138-P2  Gmo-Mir-138-P2  Hsa-Mir-138-P2  Laf-Mir-138-P2  Loc-Mir-138-P2  Mal-Mir-138-P2  Mdo-Mir-138-P2  Mml-Mir-138-P2  Mmr-Mir-138-P2  Mmu-Mir-138-P2  Neu-Mir-138-P2  Oan-Mir-138-P2  Ocu-Mir-138-P2  Pab-Mir-138-P2  Pbv-Mir-138-P2  Pma-Mir-138-o2  Rno-Mir-138-P2  Sha-Mir-138-P2  Spt-Mir-138-P2  Sto-Mir-138-P2  Tgu-Mir-138-P2  Tni-Mir-138-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127786.1: 563197-563264 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCACUGAAACAGAAUAGGUAUUGGUGCUGCAGCUGGUGUUGUGAAUCAGGCCGGCAAAAAGUACCUGCUACGAUCCGGCUAUUUCACAACACCAGGGUUGCAUCAUACCGCUUGCCUUCAUUGCAAGA
Get precursor sequence
Structure
        10           20        30        40        50        60    
UCACUGAAACAGAAUAG---|   U     U  AG             UCA     GCAAAAAGUA 
                    GUAU GGUGC GC  CUGGUGUUGUGAA   GGCCG          C
                    CAUA CUACG UG  GACCACAACACUU   UCGGC          C
AGAACGUUACUUCCGUUCGC^   -     U  G-             UA-     CUAGCAUCGU 
      120       110        100         90         80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-138-P2_5p (predicted)

mirBase accessionNone
Sequence
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
Star sequence

Lch-Mir-138-P2_3p* (predicted)

mirBase accessionNone
Sequence
47- GCUAUUUCACAACACCAGGGU -68
Get sequence