MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-138-P2

Family name MIR-138 (all species)
Seed GCUGGUG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-138-2
Paralogues Rno-Mir-138-P1 
Orthologues Aca-Mir-138-P2  Ami-Mir-138-P2  Bta-Mir-138-P2  Cfa-Mir-138-P2  Cja-Mir-138-P2  Cli-Mir-138-P2  Cmi-Mir-138-P2  Cpi-Mir-138-P2  Cpo-Mir-138-P2  Dno-Mir-138-P2  Dre-Mir-138-P2  Eca-Mir-138-P2  Ete-Mir-138-P2  Gga-Mir-138-P2  Gja-Mir-138-P2  Gmo-Mir-138-P2  Hsa-Mir-138-P2  Laf-Mir-138-P2  Lch-Mir-138-P2  Loc-Mir-138-P2  Mal-Mir-138-P2  Mdo-Mir-138-P2  Mml-Mir-138-P2  Mmr-Mir-138-P2  Mmu-Mir-138-P2  Neu-Mir-138-P2  Oan-Mir-138-P2  Ocu-Mir-138-P2  Pab-Mir-138-P2  Pbv-Mir-138-P2  Pma-Mir-138-o2  Sha-Mir-138-P2  Spt-Mir-138-P2  Sto-Mir-138-P2  Tgu-Mir-138-P2  Tni-Mir-138-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr19: 11149754-11149821 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAGCCGCUAAUUCCGGUAUGGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACGAGCAACGCAUCCUCUUACCCGGCUAUUUCACGACACCAGGGUUGCACCCUACCCAUCCUCUCCAGGCAAGCC
Get precursor sequence
Structure
        10           20        30        40        50        60    
AGAAGCCGCUAAUUCCG---|  U   U  U  AG             UCA     ACGAGCAACG 
                    GUA GGU GC GC  CUGGUGUUGUGAA   GGCCG          C
                    CAU CCA CG UG  GACCACAGCACUU   UCGGC          A
CCGAACGGACCUCUCCUACC^  C   -  U  G-             UA-     CCAUUCUCCU 
      120       110        100         90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-138-P2_5p
mirBase accessionMIMAT0000844
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
Proposed targets microrna.org: MIMAT0000844
TargetScanVert: rno-miR-138-5p
miRDB: MIMAT0000844
Star sequence

Rno-Mir-138-P2_3p*
mirBase accessionMIMAT0017127
Sequence 
47- GCUAUUUCACGACACCAGGGU -68
Get sequence
Proposed targets TargetScanVert: rno-miR-138-2-3p
miRDB: MIMAT0017127