MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-138-P2

Family name MIR-138 (all species)
Seed GCUGGUG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-138-1
Paralogues Gmo-Mir-138-P1a  Gmo-Mir-138-P1b 
Orthologues Aca-Mir-138-P2  Ami-Mir-138-P2  Bta-Mir-138-P2  Cfa-Mir-138-P2  Cja-Mir-138-P2  Cli-Mir-138-P2  Cmi-Mir-138-P2  Cpi-Mir-138-P2  Cpo-Mir-138-P2  Dno-Mir-138-P2  Dre-Mir-138-P2  Eca-Mir-138-P2  Ete-Mir-138-P2  Gga-Mir-138-P2  Gja-Mir-138-P2  Hsa-Mir-138-P2  Laf-Mir-138-P2  Lch-Mir-138-P2  Loc-Mir-138-P2  Mal-Mir-138-P2  Mdo-Mir-138-P2  Mml-Mir-138-P2  Mmr-Mir-138-P2  Mmu-Mir-138-P2  Neu-Mir-138-P2  Oan-Mir-138-P2  Ocu-Mir-138-P2  Pab-Mir-138-P2  Pbv-Mir-138-P2  Pma-Mir-138-o2  Rno-Mir-138-P2  Sha-Mir-138-P2  Spt-Mir-138-P2  Sto-Mir-138-P2  Tgu-Mir-138-P2  Tni-Mir-138-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_606: 3847-3912 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGAGAUGUGUGUUGGGUGUGUGCGCUGCAGCUGGUGUUGUGAAUCAGGCCGACGACCGACACUUUGAUUACCGGCUACUUCACAACACCAGGGUAGUACCACACCAAUGUCUACAAGACCCGCC
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Structure
        10           20        30        40        50        60   
GAAGAGAUGUGUGUUGG---|    UGC     AG             UCA     ACGACCGAC 
                    GUGUG   GCUGC  CUGGUGUUGUGAA   GGCCG         A
                    CACAC   UGAUG  GACCACAACACUU   UCGGC         C
CCGCCCAGAACAUCUGUAAC^    CA-     G-             CA-     CAUUAGUUU 
    120       110       100          90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-138-P2_5p
mirBase accessionMIMAT0044223
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Gmo-Mir-138-P2_3p*
mirBase accessionNone
Sequence 
45- GCUACUUCACAACACCAGGGU -66
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