MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-138-P2

Family name MIR-138 (all species)
Seed GCUGGUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-138-2
Paralogues Ami-Mir-138-P1 
Orthologues Aca-Mir-138-P2  Bta-Mir-138-P2  Cfa-Mir-138-P2  Cja-Mir-138-P2  Cli-Mir-138-P2  Cmi-Mir-138-P2  Cpi-Mir-138-P2  Cpo-Mir-138-P2  Dno-Mir-138-P2  Dre-Mir-138-P2  Eca-Mir-138-P2  Ete-Mir-138-P2  Gga-Mir-138-P2  Gja-Mir-138-P2  Gmo-Mir-138-P2  Hsa-Mir-138-P2  Laf-Mir-138-P2  Lch-Mir-138-P2  Loc-Mir-138-P2  Mal-Mir-138-P2  Mdo-Mir-138-P2  Mml-Mir-138-P2  Mmr-Mir-138-P2  Mmu-Mir-138-P2  Neu-Mir-138-P2  Oan-Mir-138-P2  Ocu-Mir-138-P2  Pab-Mir-138-P2  Pbv-Mir-138-P2  Pma-Mir-138-o2  Rno-Mir-138-P2  Sha-Mir-138-P2  Spt-Mir-138-P2  Sto-Mir-138-P2  Tgu-Mir-138-P2  Tni-Mir-138-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017712856.1: 274386-274453 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUACAGGAUGGCAUAAGGUAUUGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACAACAAGCGCAUCCUACUAUCCGGCUAUUUCACUACACCAGGGUUGCAUCAUACCACUCACCUUCACUCCUCAG
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Structure
        10           20        30        40        50        60    
UUACAGGAUGGCAUAAG---|   U U   U  AG       U     UCA     ACAACAAGCG 
                    GUAU G UGC GC  CUGGUGU GUGAA   GGCCG          C
                    CAUA C ACG UG  GACCACA CACUU   UCGGC          A
GACUCCUCACUUCCACUCAC^   - U   U  G-       U     UA-     CUAUCAUCCU 
      120       110        100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-138-P2_5p
mirBase accessionMIMAT0038155
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Ami-Mir-138-P2_3p*
mirBase accessionMIMAT0038157
Sequence 
47- GCUAUUUCACUACACCAGGGU -68
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