| MirGeneDB ID | Eca-Mir-138-P2 |
|---|
| Family name |
MIR-138 (all species) |
|---|
| Seed |
GCUGGUG |
|---|
| Species |
Horse (Equus caballus) |
|---|
| MiRBase ID |
eca-mir-138-1
|
|---|
| Paralogues |
Eca-Mir-138-P1
|
|---|
| Orthologues |
Aca-Mir-138-P2
Ami-Mir-138-P2
Bta-Mir-138-P2
Cfa-Mir-138-P2
Cja-Mir-138-P2
Cli-Mir-138-P2
Cmi-Mir-138-P2
Cpi-Mir-138-P2
Cpo-Mir-138-P2
Dno-Mir-138-P2
Dre-Mir-138-P2
Ete-Mir-138-P2
Gga-Mir-138-P2
Gja-Mir-138-P2
Gmo-Mir-138-P2
Hsa-Mir-138-P2
Laf-Mir-138-P2
Lch-Mir-138-P2
Loc-Mir-138-P2
Mal-Mir-138-P2
Mdo-Mir-138-P2
Mml-Mir-138-P2
Mmr-Mir-138-P2
Mmu-Mir-138-P2
Neu-Mir-138-P2
Oan-Mir-138-P2
Ocu-Mir-138-P2
Pab-Mir-138-P2
Pbv-Mir-138-P2
Pma-Mir-138-o2
Rno-Mir-138-P2
Sha-Mir-138-P2
Spt-Mir-138-P2
Sto-Mir-138-P2
Tgu-Mir-138-P2
Tni-Mir-138-P2
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCA_002863925.1_EquCab3.0) |
CM009150.1: 9900390-9900457 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGCCGGCAGAGUUCUGGUAUCGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACGAGCAGUGCAUCCUCUUACCCGGCUAUUUCACGACACCAGGGUUGCAUCAUACCCAUCCUCUCCAGGCGAGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGCCGGCAGAGUUCUG---| CGU U AG UCA ACGAGCAGUG
GUAU UGC GC CUGGUGUUGUGAA GGCCG C
CAUA ACG UG GACCACAGCACUU UCGGC A
CCGAGCGGACCUCUCCUACC^ CU- U G- UA- CCAUUCUCCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although usually templated it is assummed that Mir-138-P2 is often a Group 2 miRNA given the available 3' DcRNA reads as well as a mutation in python and some of the fish at the very 3' terminus that supports the terminal addition of the 3' uridine. |
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Eca-Mir-138-P2_5p |
| mirBase accession | MIMAT0012925 |
|---|
| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
|---|
| Star sequence |
Eca-Mir-138-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
47- GCUAUUUCACGACACCAGGGU -68
Get sequence
|
|---|
