Mir-138-P2

MirGeneDB ID

Pab-Mir-138-P2

Family name

MIR-138 (all species)

Seed

GCUGGUG

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-138-P1

Orthologues

Aca-Mir-138-P2 Ami-Mir-138-P2 Bta-Mir-138-P2 Cfa-Mir-138-P2 Cja-Mir-138-P2 Cli-Mir-138-P2 Cmi-Mir-138-P2 Cpi-Mir-138-P2 Cpo-Mir-138-P2 Dno-Mir-138-P2 Dre-Mir-138-P2 Eca-Mir-138-P2 Ete-Mir-138-P2 Gga-Mir-138-P2 Gja-Mir-138-P2 Gmo-Mir-138-P2 Hsa-Mir-138-P2 Laf-Mir-138-P2 Lch-Mir-138-P2 Loc-Mir-138-P2 Mal-Mir-138-P2 Mdo-Mir-138-P2 Mml-Mir-138-P2 Mmr-Mir-138-P2 Mmu-Mir-138-P2 Neu-Mir-138-P2 Oan-Mir-138-P2 Ocu-Mir-138-P2 Pbv-Mir-138-P2 Pma-Mir-138-o2 Rno-Mir-138-P2 Sha-Mir-138-P2 Spt-Mir-138-P2 Sto-Mir-138-P2 Tgu-Mir-138-P2 Tni-Mir-138-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054697.2: 56123031-56123098 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGCCGGCGGAGUUCUGGUAUCGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACGAGCAGCGCAUCCUCUUACCCGGCUAUUUCACGACACCAGGGUUGCAUCAUACCCAUCCUCUCCAGGCGAGCC

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Structure

        10           20        30        40        50        60    
AAGCCGGCGGAGUUCUG---|   CGU   U  AG             UCA     ACGAGCAGCG 
                    GUAU   UGC GC  CUGGUGUUGUGAA   GGCCG          C
                    CAUA   ACG UG  GACCACAGCACUU   UCGGC          A
CCGAGCGGACCUCUCCUACC^   CU-   U  G-             UA-     CCAUUCUCCU 
      120       110        100         90         80        70

Deep sequencing

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Comment

Although usually templated it is assummed that Mir-138-P2 is often a Group 2 miRNA given the available 3' DcRNA reads as well as a mutation in python and some of the fish at the very 3' terminus that supports the terminal addition of the 3' uridine.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-138-P2_5p

mirBase accession

None

Sequence

0- AGCUGGUGUUGUGAAUCAGGCCG -23

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Star sequence

Pab-Mir-138-P2_3p*

mirBase accession

None

Sequence

47- GCUAUUUCACGACACCAGGGU -68

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