MirGeneDB ID | Pma-Mir-138-o2 |
Family name |
MIR-138 (all species) |
Seed |
GCUGGUG |
Species |
Sea Lamprey (Petromyzon marinus) |
MiRBase ID |
|
Paralogues |
Pma-Mir-138-o1
Pma-Mir-138-o3
|
Orthologues |
Aca-Mir-138-P2
Ami-Mir-138-P2
Bta-Mir-138-P2
Cfa-Mir-138-P2
Cja-Mir-138-P2
Cli-Mir-138-P2
Cmi-Mir-138-P2
Cpi-Mir-138-P2
Cpo-Mir-138-P2
Dno-Mir-138-P2
Dre-Mir-138-P2
Eca-Mir-138-P2
Ete-Mir-138-P2
Gga-Mir-138-P2
Gja-Mir-138-P2
Gmo-Mir-138-P2
Hsa-Mir-138-P2
Laf-Mir-138-P2
Lch-Mir-138-P2
Loc-Mir-138-P2
Mal-Mir-138-P2
Mdo-Mir-138-P2
Mml-Mir-138-P2
Mmr-Mir-138-P2
Mmu-Mir-138-P2
Neu-Mir-138-P2
Oan-Mir-138-P2
Ocu-Mir-138-P2
Pab-Mir-138-P2
Pbv-Mir-138-P2
Rno-Mir-138-P2
Sha-Mir-138-P2
Spt-Mir-138-P2
Sto-Mir-138-P2
Tgu-Mir-138-P2
Tni-Mir-138-P2
|
Node of Origin (locus) |
P. marinus
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046088.1: 7504922-7504989 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGGUUCUCUGGGCCCCGGUGCAGCGGUGCAGCUGGUGUUGUGAAUCAGGCUGAAGCCGCAGUGCUCCAAACACUGGCCGUUUCACCACGCCAGCCCACUGCCGCACCACACUCACCAACCAUCGCCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGGGUUCUCUGGGCCCC---| A CA U UCA GAAGCCGCAGU
GGUGC GCGGUG GCUGGUGU GUGAA GGCU \
CCACG CGUCAC CGACCGCA CACUU CCGG G
GCCGCUACCAACCACUCACA^ C C- C UG- UCACAAACCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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Mature sequence |
Pma-Mir-138-o2_5p |
mirBase accession | None |
Sequence |
0- AGCUGGUGUUGUGAAUCAGGCUG -23
Get sequence
|
Star sequence |
Pma-Mir-138-o2_3p* |
mirBase accession | None |
Sequence |
46- GCCGUUUCACCACGCCAGCCCA -68
Get sequence
|