MirGeneDB ID | Tni-Mir-138-P2 |
Family name |
MIR-138 (all species) |
Seed |
GCUGGUG |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
tni-mir-138
|
Paralogues |
Tni-Mir-138-P1a
|
Orthologues |
Aca-Mir-138-P2
Ami-Mir-138-P2
Bta-Mir-138-P2
Cfa-Mir-138-P2
Cja-Mir-138-P2
Cli-Mir-138-P2
Cmi-Mir-138-P2
Cpi-Mir-138-P2
Cpo-Mir-138-P2
Dno-Mir-138-P2
Dre-Mir-138-P2
Eca-Mir-138-P2
Ete-Mir-138-P2
Gga-Mir-138-P2
Gja-Mir-138-P2
Gmo-Mir-138-P2
Hsa-Mir-138-P2
Laf-Mir-138-P2
Lch-Mir-138-P2
Loc-Mir-138-P2
Mal-Mir-138-P2
Mdo-Mir-138-P2
Mml-Mir-138-P2
Mmr-Mir-138-P2
Mmu-Mir-138-P2
Neu-Mir-138-P2
Oan-Mir-138-P2
Ocu-Mir-138-P2
Pab-Mir-138-P2
Pbv-Mir-138-P2
Pma-Mir-138-o2
Rno-Mir-138-P2
Sha-Mir-138-P2
Spt-Mir-138-P2
Sto-Mir-138-P2
Tgu-Mir-138-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
13: 1437205-1437272 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAGCUGUGCCUGUCAGGUGUGUGUGCUGCAGCUGGUGUUGUGAAUCAGGCCGAUGACAGACACCUCCUAGAAGCCGGCUAUUUCACAACACCAGGGUGGCACCGUACCACUGCCGACGAUGAGGAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAAGCUGUGCCUGUCAG---| U UG AG UCA AUGACAGACA
GUGUG GUGC C CUGGUGUUGUGAA GGCCG C
CAUGC CACG G GACCACAACACUU UCGGC C
AGAGGAGUAGCAGCCGUCAC^ - GU G- UA- CGAAGAUCCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tni-Mir-138-P2_5p |
mirBase accession | MIMAT0003080 |
Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
Star sequence |
Tni-Mir-138-P2_3p* |
mirBase accession | None |
Sequence |
47- GCUAUUUCACAACACCAGGGU -68
Get sequence
|