| MirGeneDB ID | Dre-Mir-138-P1a |
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| Family name |
MIR-138 (all species) |
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| Seed |
GCUGGUG |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-138-2
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| Paralogues |
Dre-Mir-138-P2
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| Orthologues |
Aca-Mir-138-P1
Ami-Mir-138-P1
Bta-Mir-138-P1
Cfa-Mir-138-P1
Cja-Mir-138-P1
Cli-Mir-138-P1
Cmi-Mir-138-P1
Cpo-Mir-138-P1
Dno-Mir-138-P1
Eca-Mir-138-P1
Ete-Mir-138-P1
Gga-Mir-138-P1
Gja-Mir-138-P1
Gmo-Mir-138-P1a
Hsa-Mir-138-P1
Laf-Mir-138-P1
Lch-Mir-138-P1
Loc-Mir-138-P1
Mal-Mir-138-P1a
Mdo-Mir-138-P1
Mml-Mir-138-P1
Mmr-Mir-138-P1
Mmu-Mir-138-P1
Mun-Mir-138-P1
Neu-Mir-138-P1
Oan-Mir-138-P1
Ocu-Mir-138-P1
Pab-Mir-138-P1
Pbv-Mir-138-P1
Pma-Mir-138-o1
Rno-Mir-138-P1
Sha-Mir-138-P1
Spt-Mir-138-P1
Sto-Mir-138-P1
Tgu-Mir-138-P1
Tni-Mir-138-P1a
Xtr-Mir-138-P1
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| Node of Origin (locus) |
Clupeocephala
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| Node of Origin (family) |
Vertebrata
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Genome context
(danRer11) |
chr16: 7836268-7836329 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUGAGACUGUUGUCUCUGAUGGAGCAGGACAGCUGGUGUUGUGAAUCAGGCCGCCGUGGUGAAAGGGUACGGCUUCUUCACAACACCAGGGUCUCACUUCAUCACACACGGCAACACCAUUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CUGAGACUGUUGUCUCU--| CA AG UC CCGUGGU
GAUGGAG GGAC CUGGUGUUGUGAA AGGCCG G
CUACUUC UCUG GACCACAACACUU UUCGGC A
CUUACCACAACGGCACACA^ AC G- C- AUGGGAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-138-P1a_5p |
| mirBase accession | MIMAT0001835 |
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| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
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| Star sequence |
Dre-Mir-138-P1a_3p* |
| mirBase accession | MIMAT0048652 |
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| Sequence |
41- GCUUCUUCACAACACCAGGGU -62
Get sequence
|
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