MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-138-P1

Family name MIR-138 (all species)
Seed GCUGGUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-138
Paralogues
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cja-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Eca-Mir-138-P1  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Gmo-Mir-138-P1b  Hsa-Mir-138-P1  Laf-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mal-Mir-138-P1b  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmr-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Neu-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pab-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xla-Mir-138-P1c  Xla-Mir-138-P1d 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr6: 73571452-73571512 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCUUAUAAGGAUCACGGUGCGGAGCAGCAGCUGGUGUUGUGAAUCAGGCCGUGACCACUCAGAAAACGGCUACUUCACAACACCAGGGUUGCUUCUCACCUCUGCCAGCAUUUGGACAU
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Structure
        10          20        30        40        50        60 
CAGCUUAUAAGGAUCAC--|   C        AG             UCA     UGACCAC 
                   GGUG GGAGCAGC  CUGGUGUUGUGAA   GGCCG       \
                   CCAC CUUCGUUG  GACCACAACACUU   UCGGC       U
UACAGGUUUACGACCGUCU^   U        G-             CA-     AAAAGAC 
 .       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-138-P1_5p
mirBase accessionMIMAT0003599
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Proposed targets TargetScanVert: xtr-miR-138
Star sequence

Xtr-Mir-138-P1_3p*
mirBase accessionNone
Sequence 
40- GCUACUUCACAACACCAGGGU -61
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