MirGeneDB ID | Aca-Mir-138-P1 |
Family name |
MIR-138 (all species) |
Seed |
GCUGGUG |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-138-2
|
Paralogues |
Aca-Mir-138-P2
|
Orthologues |
Ami-Mir-138-P1
Bta-Mir-138-P1
Cfa-Mir-138-P1
Cja-Mir-138-P1
Cli-Mir-138-P1
Cmi-Mir-138-P1
Cpo-Mir-138-P1
Dno-Mir-138-P1
Dre-Mir-138-P1a
Eca-Mir-138-P1
Ete-Mir-138-P1
Gga-Mir-138-P1
Gja-Mir-138-P1
Gmo-Mir-138-P1a
Gmo-Mir-138-P1b
Hsa-Mir-138-P1
Laf-Mir-138-P1
Lch-Mir-138-P1
Loc-Mir-138-P1
Mal-Mir-138-P1a
Mal-Mir-138-P1b
Mdo-Mir-138-P1
Mml-Mir-138-P1
Mmr-Mir-138-P1
Mmu-Mir-138-P1
Mun-Mir-138-P1
Neu-Mir-138-P1
Oan-Mir-138-P1
Ocu-Mir-138-P1
Pab-Mir-138-P1
Pbv-Mir-138-P1
Pma-Mir-138-o1
Rno-Mir-138-P1
Sha-Mir-138-P1
Spt-Mir-138-P1
Sto-Mir-138-P1
Tgu-Mir-138-P1
Tni-Mir-138-P1a
Xla-Mir-138-P1c
Xla-Mir-138-P1d
Xtr-Mir-138-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (anoCar2) |
1: 193168238-193168298 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUGAGCCAAACCAUAUGGCUUGGUGUAGCAGCUGGUGUUGUGAAUCAGGCCGUUGCCAAAGAGAGAACGGCUACUUCACAACACCAGGGUUGCCCCCUGCCACAAUCAACUGCCCUAUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGUGAGCCAAACCAUAU--| UU U AG UCA UUGCCAA
GGC GG GUAGC CUGGUGUUGUGAA GGCCG \
CCG CC CGUUG GACCACAACACUU UCGGC A
AGUAUCCCGUCAACUAACA^ UC C G- CA- AAGAGAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Aca-Mir-138-P1_5p |
mirBase accession | MIMAT0021757 |
Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
Star sequence |
Aca-Mir-138-P1_3p* |
mirBase accession | MIMAT0021759 |
Sequence |
40- GCUACUUCACAACACCAGGGU -61
Get sequence
|