| MirGeneDB ID | Ebu-Mir-140-P3-v2 |
|---|
| Family name |
MIR-140 (all species) |
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| Seed |
ACCACAG |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-140-P3-v1
Ebu-Mir-140-P4-v1
Ebu-Mir-140-P4-v2
|
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| Orthologues |
Pma-Mir-140-o3
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02009326.1: 825017-825077 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAAUCUUGAGUCGCACUGUGUGGCGCCUUCCAGUGGUUUUUCCCUAUGGUAGGUUGGAUUUGCUUGUCUACCACAGGGUAGAACCACGGACGGGAGCUGUGCAAGGCCCUCUGCAAAAGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAAUCUUGAGUCGCACU-- UG G -| A U A UUGGAU
G UGGC CCU UCC GUGGUUUU CCCU UGGUAGG \
C GUCG GGG AGG CACCAAGA GGGA ACCAUCU U
AGGAAAACGUCUCCCGGAA GU A C^ - U C GUUCGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ebu-Mir-140-P3-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUGGUUUUUCCCUAUGGUAGG -23
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-140-P3-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UACCACAGGGUAGAACCACGGAC -61
Get sequence
|
|---|
