MirGeneDB 3.0

MirGeneDB ID

Ebu-Mir-196-P5

Family name MIR-196 (all species)
Seed AGGUAGU
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-196-P6 
Orthologues Cin-Mir-196 
Node of Origin (locus) E. burgeri
Node of Origin (family) Olfactores
Genome context
(Eburgeri_3)
FYBX02009525.1: 1711837-1711894 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACAUCUUCAGAAGAUGAUUGGUUGUGAUUUAGGUAGUUUCAUGUUGUUGGGAGGUCGACAAUGUUCGACAGCAAGAAACUGCCUUGAUCAUACCAUUCACUACCUGCGAGCAACCGC
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Structure
        10           20        30        40        50        
GACAUCUUCAGAAGAUGAU---|   U      U          A          AGGUC 
                      UGGU GUGAUU AGGUAGUUUC UGUUGUUGGG     G
                      ACCA UACUAG UCCGUCAAAG ACGACAGCUU     A
CGCCAACGAGCGUCCAUCACUU^   -      U          A          GUAAC 
      110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
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To
Mature sequence

Ebu-Mir-196-P5_5p

mirBase accessionNone
Sequence
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Ebu-Mir-196-P5_3p* (predicted)

mirBase accessionNone
Sequence
36- CGACAGCAAGAAACUGCCUUGA -58
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