MirGeneDB ID | Ebu-Mir-196-P5 |
Family name |
MIR-196 (all species) |
Seed |
AGGUAGU |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-196-P6
|
Orthologues |
Cin-Mir-196
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Olfactores
|
Genome context (Eburgeri_3) |
FYBX02009525.1: 1711837-1711894 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACAUCUUCAGAAGAUGAUUGGUUGUGAUUUAGGUAGUUUCAUGUUGUUGGGAGGUCGACAAUGUUCGACAGCAAGAAACUGCCUUGAUCAUACCAUUCACUACCUGCGAGCAACCGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GACAUCUUCAGAAGAUGAU---| U U A AGGUC
UGGU GUGAUU AGGUAGUUUC UGUUGUUGGG G
ACCA UACUAG UCCGUCAAAG ACGACAGCUU A
CGCCAACGAGCGUCCAUCACUU^ - U A GUAAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-196-P5_5p |
mirBase accession | None |
Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
Star sequence |
Ebu-Mir-196-P5_3p* (predicted) |
mirBase accession | None |
Sequence |
36- CGACAGCAAGAAACUGCCUUGA -58
Get sequence
|