MirGeneDB ID | Ebu-Mir-196-P6 |
Family name |
MIR-196 (all species) |
Seed |
AGGUAGU |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-196-P5
|
Orthologues |
Cin-Mir-196
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Olfactores
|
Genome context (Eburgeri_3) |
FYBX02009826.1: 1916388-1916448 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGGGAACAGAGUUGAGCUGCCACGUGAUGUAGGUAGUUUCAUGUUGUUGGGGGUAUUUAUGGGACACUCAGCAACGUGGAACUGCCAAGAUUACGUCAGCUGUCGACGUCAUACACAAGG
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|
Structure | 10 20 30 40 50
UUGGGAACAGAGUUGAGCU- C-| GUA GGUAUUU
GC ACGUGAU GGUAGUUUCAUGUUGUUGGG \
CG UGCAUUA CCGUCAAGGUGCAACGACUC A
GGAACACAUACUGCAGCUGU AC^ GAA ACAGGGU
. 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-196-P6_5p |
mirBase accession | None |
Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
Star sequence |
Ebu-Mir-196-P6_3p* (predicted) |
mirBase accession | None |
Sequence |
39- CAGCAACGUGGAACUGCCAAGA -61
Get sequence
|