| MirGeneDB ID | Ebu-Mir-199-P5 |
|---|
| Family name |
MIR-199 (all species) |
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| Seed |
CCAGUGU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-199-P6
|
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| Orthologues |
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02009869.1: 649889-649949 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UAAGGAAUAAAUUUUGUGCCUCCUCGUCUGCCCAGUGUUCAGACUACCUGUUCAGGAGGUUGUUGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAUGGCUGAGCAUCACAGAGCCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAAGGAAUAAAUUUUGU-----| CCUC C U C U AGGAGG
GCCU GUCUG CCAGUGU CAGACUAC UGU C U
CGGG CAGAU GGUUACA GUCUGAUG ACA G U
UCCGAGACACUACGAGUCGGUA^ U--- U C - U UUGUUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ebu-Mir-199-P5_5p |
| mirBase accession | None |
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| Sequence |
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-199-P5_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
|
|---|
