| MirGeneDB ID | Ebu-Mir-205-P5 |
|---|
| Family name |
MIR-205 (all species) |
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| Seed |
CCUUCAU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-205-P6
|
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| Orthologues |
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02009763.1: 3258576-3258632 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAAUCUCACAACAUCCAGUGUUUGCUGACGUCCUUCAUUCCACCGGAGUCUGUGGUUUUAAAGACAGAUUUCGGGGCAUGAAGCGCGUUAGACACUUGGGAAAGCAACACAGGACCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAUCUCACAACAUCCA-----| UUG C U A GGUU
GUGU CUGACGU CUUCAU CC CCGGAGUCUGU U
CACA GAUUGCG GAAGUA GG GGCUUUAGACA U
UCCAGGACACAACGAAAGGGUU^ --- C C - GAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ebu-Mir-205-P5_5p |
| mirBase accession | None |
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| Sequence |
0- UCCUUCAUUCCACCGGAGUCUGU -23
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-205-P5_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- AGAUUUCGGGGCAUGAAGCGCG -57
Get sequence
|
|---|
