| MirGeneDB ID | Ebu-Mir-218-P6 |
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| Family name |
MIR-218 (all species) |
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| Seed |
UGUGCUU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-218-P5
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| Orthologues |
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
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Genome context
(Eburgeri_3) |
FYBX02008409.1: 3657243-3657306 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAUUCAACGCAAGCUCUGCGUGGCUUGCCCUUGUGCUUGAUCUAACCAUGCGAUGGCGAGGUAUAGGAACACCGUGGUUCUGUCAAGCACCGCGGCAGGCUGCGCCUUGUUGUCACACACACGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAUUCAACGCAAGCUCU--| UG CUU CU CGAUGGCGAG
GCG GCUUGCC GUGCUUGAU AACCAUG G
CGC CGGACGG CACGAACUG UUGGUGC U
CGCACACACACUGUUGUUC^ GU CGC UC CACAAGGAUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Ebu-Mir-218-P6_5p |
| mirBase accession | None |
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| Sequence |
0- UUGUGCUUGAUCUAACCAUGCGAU -24
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-218-P6_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- ACCGUGGUUCUGUCAAGCACCGCG -64
Get sequence
|
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