| MirGeneDB ID | Ebu-Mir-221-P2e |
|---|
| Family name |
MIR-221 (all species) |
|---|
| Seed |
GCUACAU |
|---|
| Species |
Inshore hagfish (Eptatretus burgeri) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. burgeri
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(Eburgeri_3) |
FYBX02010127.1: 1809220-1809281 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GACAAGACAAACGUCCAGUGCUGCCCGCUGACCCAGCACACAUUGUAGAAUCCUGUGCCCUACAUGCAACAGCUACAUUGUCUGCUGGGUUAGUGUGCAGUUUUAUCAGCAUGAACGUCAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GACAAGACAAACGUCCAGU--| C C U AAUC GCCCU
GCUGC CGCUGACCCAGCA ACA UGUAG CUGU A
UGACG GUGAUUGGGUCGU UGU ACAUC GACA C
UAACUGCAAGUACGACUAUUU^ U C U ---- ACGUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ebu-Mir-221-P2e_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- ACCCAGCACACAUUGUAGAAUCCUGU -26
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-221-P2e_3p |
| mirBase accession | None |
|---|
| Sequence |
40- AGCUACAUUGUCUGCUGGGUUA -62
Get sequence
|
|---|
