MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-23-P5

Family name MIR-23 (all species)
Seed UCACAUU
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-23-P6 
Orthologues
Node of Origin (locus) E. burgeri
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)
FYBX02009499.1: 1849196-1849255 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCGUGACGUAAAACGUCUGGUUCUGAGGGGGGUUCCUGGCAUCGUGAUUUGUGCUGCGAAGGAAAAUCACAUUGCCAGGGAUUACCACCCAGUCCCAGCACACGUCAGCACUGCACUG
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Structure
        10          20        30          40        50         
UUUCGUGACGUAAAACGU--    UU   A  -  -|          UC       GUGCUG 
                    CUGG  CUG GG GG GGUUCCUGGCA  GUGAUUU      \
                    GACC  GAC CC CC UUAGGGACCGU  CACUAAA      C
GUCACGUCACGACUGCACAC    CU   -  A  A^          UA       AGGAAG 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
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Star sequence

Ebu-Mir-23-P5_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGGUUCCUGGCAUCGUGAUUU -22
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Mature sequence

Ebu-Mir-23-P5_3p

mirBase accessionNone
Sequence
37- AUCACAUUGCCAGGGAUUACCAC -60
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