MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-23-P6

Family name MIR-23 (all species)
Seed UCACAUU
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-23-P5 
Orthologues
Node of Origin (locus) E. burgeri
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)
FYBX02009928.1: 2218744-2218804 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUUGCUUCCUUUUGGGUUGCGUGCGUGUGGGUUCCUGGCACGGUGAUUUGUGUUGUUGUAAUGAAAAUCACAUUGCCAGGGAUUACCACGUGAACGUAGGAUGCUGCAGCACUCGAGAG
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Structure
        10          20          30        40        50         
GUUUUGCUUCCUUUUGGG--      --|    UG           CG       GUGUUGU 
                    UUGCGU  GCGUG  GGUUCCUGGCA  GUGAUUU       \
                    GAUGCA  UGCAC  UUAGGGACCGU  CACUAAA       U
GAGAGCUCACGACGUCGUAG      AG^    CA           UA       AGUAAUG 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
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Star sequence

Ebu-Mir-23-P6_5p*

mirBase accessionNone
Sequence
0- GGGUUCCUGGCACGGUGAUUU -21
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Mature sequence

Ebu-Mir-23-P6_3p

mirBase accessionNone
Sequence
38- AUCACAUUGCCAGGGAUUACCAC -61
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