MirGeneDB ID | Ebu-Mir-30-P2g |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-30-P1e
Ebu-Mir-30-P1f
Ebu-Mir-30-P1g
Ebu-Mir-30-P2e
Ebu-Mir-30-P2f
|
Orthologues |
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Vertebrata
|
Genome context (Eburgeri_3) |
FYBX02010654.1: 3982814-3982875 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUGCUGUUUAUACUUGAUGUCCGAGGCUCUGUAAACAUCCUUCACUCUCAGCUGUCACCUAGGCAUCAAGCUGGGGUGGGGUGUUCACAGCGCUUUACUUUGCACUGAGCAUCCUCUUGUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUGCUGUUUAUACUUGAUGUCC--| U A UU U GUCACCU
GAGGC CUGU AACAUCC CACUC CAGCU \
UUUCG GACA UUGUGGG GUGGG GUCGA A
AUGUUCUCCUACGAGUCACGUUUCA^ C C -- - ACUACGG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-30-P2g_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUUCACUCUCAGCU -24
Get sequence
|
Star sequence |
Ebu-Mir-30-P2g_3p* |
mirBase accession | None |
Sequence |
41- CUGGGGUGGGGUGUUCACAGC -62
Get sequence
|