| MirGeneDB ID | Ebu-Mir-4542 |
|---|
| Family name |
MIR-4542 (all species) |
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| Seed |
CAAGUGC |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Pma-Mir-4542
|
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| Node of Origin (locus) |
Cyclostomata
|
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| Node of Origin (family) |
Cyclostomata
|
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Genome context
(Eburgeri_3) |
FYBX02010059.1: 2027000-2027059 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CAUAUCACCCCACGUAAAGUGUGCAUGUGACAUGUUCCAUACUGCACUUCUGUGAAGAUGCUAGUCAGCAAGUGCAUUUUGGAAUGUGACAUGUGUACUCUCGUGUUCAACACUAUUGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUAUCACCCCACGUAA-- U A UAC -| UGAAGA
AG GUGCAUGUG CAUGUUCCA UGCACUU CUG \
UC CAUGUGUAC GUGUAAGGU ACGUGAA GAC U
ACGUUAUCACAACUUGUGC U A UUU C^ UGAUCG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ebu-Mir-4542_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CAUGUUCCAUACUGCACUUCUG -22
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-4542_3p |
| mirBase accession | None |
|---|
| Sequence |
37- GCAAGUGCAUUUUGGAAUGUGAC -60
Get sequence
|
|---|
