MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-4543

Family name MIR-4543 (all species)
Seed AUAGGUC
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues
Orthologues Pma-Mir-4543 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Cyclostomata
Genome context
(Eburgeri_3)
FYBX02010165.1: 3341649-3341709 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACAUAUAUGCACAGUGGUCUGUUCGGUCUAUAGGUCUGCGUCGUGAAGUGCAGUUACAUUUACAAACCACUUCUCGCACAGACCUAUUGACCACACGGGUCGUCCCCCAGCAGCUCCCA
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Structure
        10         20        30        40        50        60 
CCACAUAUAUGCACAGU-|GU    UC    U         C U  U      CAGUUACA 
                  G  CUGU  GGUC AUAGGUCUG G CG GAAGUG        \
                  C  GGCA  CCAG UAUCCAGAC C GC CUUCAC        U
ACCCUCGACGACCCCCUG^UG    CA    U         A -  U      CAAACAUU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ebu-Mir-4543_5p

mirBase accessionNone
Sequence
0- UAUAGGUCUGCGUCGUGAAGUGC -23
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Star sequence

Ebu-Mir-4543_3p*

mirBase accessionNone
Sequence
39- CACUUCUCGCACAGACCUAUUG -61
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