| MirGeneDB ID | Eca-Mir-6119 |
|---|
| Family name |
MIR-6119 (all species) |
|---|
| Seed |
GAGGUAA |
|---|
| Species |
Horse (Equus caballus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-6119
|
|---|
| Node of Origin (locus) |
Scrotifera
|
|---|
| Node of Origin (family) |
Scrotifera
|
|---|
Genome context
(GCA_002863925.1_EquCab3.0) |
CM009179.1: 98954634-98954697 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCUGUGUUUUCCUAGCCUGGAAUCGUUUUGAGAGGUAAAAAAUUGAUUUGACUAGUUCUUAAACACAUCUAGCAAAUCAUUUUUUACUCUCCAAAAAGAGCUCCAAACUUGAAGGAAGGAAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCUGUGUUUUCCUAGCC-- A-| G A - U A AGUUCUUA
UGGA UC UUUUG GAG GUAAAAAAU GAUUUG CU \
ACCU AG AAAAC CUC CAUUUUUUA CUAAAC GA A
AAAAAGGAAGGAAGUUCAA CG^ A - U - - UCUACACA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Eca-Mir-6119_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGGUAAAAAAUUGAUUUGACU -23
Get sequence
|
|---|
| Star sequence |
Eca-Mir-6119_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- CAAAUCAUUUUUUACUCUCCAA -64
Get sequence
|
|---|
