MirGeneDB 3.0
MirGeneDB ID

Eca-Novel-5

Family name ECA-NOVEL-5 (all species)
Seed CCAGACG
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. caballus
Node of Origin (family) E. caballus
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009159.1: 28760007-28760071 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Novel-5)		 Mir-192-P4 CM009159.1: 28723073-28723136 [-] UCSC Ensembl
Mir-194-P4 CM009159.1: 28723280-28723337 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAGUGGGUCCUCGCGCCUACUGCUGGUCUCCAGACGGUGCGGGCUCUCCGGAUUUUUAUUUGCCAGCAUCCUGGAGCCACGCCCUCUUGGAGAUCGGCUUUCAGGCCUGCCUCCCUGCAGAGG
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Structure
        10         20         30         40         50        60  
CUGAGUGGGUCCUCGCG-   ACU-          -|  C  U   -      CC   UUUUUAU 
                  CCU    GCUGGUCUCC AGA GG GCG GGCUCU  GGA       U
                  GGA    CGGCUAGAGG UCU CC CGC CCGAGG  CCU       U
GGAGACGUCCCUCCGUCC   CUUU          U^  -  -   A      U-   ACGACCG 
   120       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Novel-5_5p
mirBase accessionNone
Sequence 
0- UCCAGACGGUGCGGGCUCUCCGGA -24
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Star sequence

Eca-Novel-5_3p*
mirBase accessionNone
Sequence 
42- CUGGAGCCACGCCCUCUUGGAGA -65
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