| MirGeneDB ID | Eca-Novel-5 |
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| Family name |
ECA-NOVEL-5 (all species) |
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| Seed |
CUUCCCA |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. caballus
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| Node of Origin (family) |
E. caballus
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009156.1: 81175483-81175542 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGUUUGAAACUACCCUGGGGUUCCCCCCUCUCUUCCCACCUACCUCUCUGCUGGGUCUGUUCUUUCCCUGGAGAGGAGGAUGGGAAGUGAAUGGAGCCCAGGCCCAGCACAGGCCCCUAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGUUUGAAACUACCCUG----| CCCC U - A GCUGGGUCU
GGGUUCC UC CUUCCCA CCU CCUCUCU G
CCCGAGG AG GAAGGGU GGA GGAGAGG U
CAUCCCCGGACACGACCCGGA^ UA-- U A - UCCCUUUCU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
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| Mature sequence |
Eca-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCUUCCCACCUACCUCUCUGCUG -23
Get sequence
|
|---|
| Star sequence |
Eca-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UGGAGAGGAGGAUGGGAAGUGA -60
Get sequence
|
|---|
