Mir-194-P4

MirGeneDB ID

Eca-Mir-194-P4

Family name

MIR-194 (all species)

Seed

GUAACAG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-194-1

Paralogues

Eca-Mir-194-P2

Orthologues

Aca-Mir-194-P4 Ami-Mir-194-P4 Bta-Mir-194-P4 Cfa-Mir-194-P4 Cja-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Dre-Mir-194-P4a Dre-Mir-194-P4b Ete-Mir-194-P4 Gja-Mir-194-P4 Gmo-Mir-194-P4a Gmo-Mir-194-P4b Hsa-Mir-194-P4 Lch-Mir-194-P4 Loc-Mir-194-P4 Mal-Mir-194-P4a Mal-Mir-194-P4b Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pab-Mir-194-P4 Pbv-Mir-194-P4 Rno-Mir-194-P4 Sha-Mir-194-P4 Spt-Mir-194-P4 Sto-Mir-194-P4 Tni-Mir-194-P4a Tni-Mir-194-P4b Xla-Mir-194-P4c Xla-Mir-194-P4d Xtr-Mir-194-P4

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009159.1: 28723280-28723337 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-194-P4)

Mir-192-P4 CM009159.1: 28723073-28723136 [-] UCSC Ensembl
Mir-194-P4 CM009159.1: 28723280-28723337 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCCCAGGCCUCCAGUGGGCUCCCACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCUGGGGCGGGGGCCAGGGUCUACGCAGGAGGAG

Get precursor sequence

Structure

        10          20        30        40        50         
GGCCCAGGCCUCCAGUG--|      A    CU         A      G     GUGCC 
                   GGCUCCC CCCC  GUAACAGCA CUCCAU UGGAA     \
                   CCGGGGG GGGG  UAUUGUCGU GGGGUG ACCUU     C
GAGGAGGACGCAUCUGGGA^      C    UC         C      -     GGUCA 
      110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-194-P4_5p

mirBase accession

MIMAT0013050

Sequence

0- UGUAACAGCAACUCCAUGUGGAA -23

Get sequence

Star sequence

Eca-Mir-194-P4_3p*

mirBase accession

None

Sequence

36- CCAGUGGGGCUGCUGUUAUCUG -58

Get sequence