| MirGeneDB ID | Bta-Mir-194-P4 |
|---|---|
| Family name | MIR-194 (all species) |
| Seed | GUAACAG |
| Species | Cow (Bos taurus) |
| MiRBase ID | bta-mir-194-2 |
| Paralogues | Bta-Mir-194-P2 |
| Orthologues | Aca-Mir-194-P4 Ami-Mir-194-P4 Cfa-Mir-194-P4 Cja-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Dre-Mir-194-P4a Dre-Mir-194-P4b Eca-Mir-194-P4 Ete-Mir-194-P4 Gja-Mir-194-P4 Gmo-Mir-194-P4a Gmo-Mir-194-P4b Hsa-Mir-194-P4 Lch-Mir-194-P4 Loc-Mir-194-P4 Mal-Mir-194-P4a Mal-Mir-194-P4b Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pab-Mir-194-P4 Pbv-Mir-194-P4 Rno-Mir-194-P4 Sha-Mir-194-P4 Spt-Mir-194-P4 Sto-Mir-194-P4 Tni-Mir-194-P4a Tni-Mir-194-P4b Xla-Mir-194-P4c Xla-Mir-194-P4d Xtr-Mir-194-P4 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037356.1: 43114583-43114639 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-194-P4) |
Mir-192-P4
NC_037356.1: 43114370-43114434 [-]
UCSC
Ensembl
Mir-194-P4 NC_037356.1: 43114583-43114639 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGCCCAGGCCUCCAACUGGCUCCCACCCCCUGUAACAGCAACUCCAUGUGGAAGUACCUCUAGUUCCAGUGGGGCUGCUGUUAUCUGGGGUGGGGGCCACGCCCACGGAGGAGGCAAGet precursor sequence |
| Structure | 10 20 30 40 50 GGCCCAGGCCUCCAACU--| CU A G GUAC GGCUCCCACCCC GUAACAGCA CUCCAU UGGAA C CCGGGGGUGGGG UAUUGUCGU GGGGUG ACCUU U AACGGAGGAGGCACCCGCA^ UC C - GAUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Bta-Mir-194-P4_5p |
| mirBase accession | MIMAT0009254 |
| Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-194 |
| Star sequence | Bta-Mir-194-P4_3p* |
| mirBase accession | None |
| Sequence |
35- CCAGUGGGGCUGCUGUUAUCUG -57
Get sequence
|
