MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-194-P4b

Family name MIR-194 (all species)
Seed GUAACAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-194
Paralogues Tni-Mir-194-P4a 
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpi-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4b  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Xtr-Mir-194-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 7: 7655331-7655389 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P4b)		 Mir-194-P4b 7: 7655331-7655389 [+] UCSC Ensembl
Mir-192-P4b-v1 7: 7655511-7655571 [+] UCSC Ensembl
Mir-192-P4b-v2 7: 7655512-7655570 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGGUUCUGAGCCUUCUGGUGCGCGCUGGAUGUAACAGCAACUCCAUGUGGAAGCUGUAUGUGUGUUCCAGUGGAAGUGCUGUUACCUGCAGAGAUCCACCGGGCACAACGUGAACCCU
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Structure
        10         20         30        40        50         
UCGGUUCUGAGCCUUCU-    CGCG-|  GAU         AC     G     GCUGU 
                  GGUG     CUG   GUAACAGCA  UCCAU UGGAA     A
                  CCAC     GAC   CAUUGUCGU  AGGUG ACCUU     U
UCCCAAGUGCAACACGGG    CUAGA^  GUC         GA     -     GUGUG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-194-P4b_5p
mirBase accessionMIMAT0002944
Sequence 
0- UGUAACAGCAACUCCAUGUGGAA -23
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Star sequence

Tni-Mir-194-P4b_3p*
mirBase accessionNone
Sequence 
37- CCAGUGGAAGUGCUGUUACCUG -59
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