MirGeneDB ID | Loc-Mir-194-P4 |
Family name |
MIR-194 (all species) |
Seed |
GUAACAG |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-194-P4
Ami-Mir-194-P4
Bta-Mir-194-P4
Cfa-Mir-194-P4
Cja-Mir-194-P4
Cpi-Mir-194-P4
Cpo-Mir-194-P4
Dno-Mir-194-P4
Dre-Mir-194-P4a
Dre-Mir-194-P4b
Eca-Mir-194-P4
Ete-Mir-194-P4
Gja-Mir-194-P4
Gmo-Mir-194-P4a
Gmo-Mir-194-P4b
Hsa-Mir-194-P4
Lch-Mir-194-P4
Mal-Mir-194-P4a
Mal-Mir-194-P4b
Mml-Mir-194-P4
Mmr-Mir-194-P4
Mmu-Mir-194-P4
Mun-Mir-194-P4
Neu-Mir-194-P4
Oan-Mir-194-P4
Ocu-Mir-194-P4
Pab-Mir-194-P4
Pbv-Mir-194-P4
Rno-Mir-194-P4
Sha-Mir-194-P4
Spt-Mir-194-P4
Sto-Mir-194-P4
Tni-Mir-194-P4a
Tni-Mir-194-P4b
Xla-Mir-194-P4c
Xla-Mir-194-P4d
Xtr-Mir-194-P4
|
Node of Origin (locus) |
Vertebrata
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Node of Origin (family) |
Vertebrata
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Genome context (LepOcu1) |
LG28: 158250-158305 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGCAGCCCUGCUCGACUGGCACUCGCUGGCUGUAACAGCAACUCCAUGUGGAAGAGCUGUGGUUCCAGUGGAGCUGCUGUUACCUGCAGAGAGGAGCCCCUGUGCAGCAGACCGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CGCAGCCCUGCUCGACU- A-| G G U- A G GAGC
GGC CUC CUG C GUAACAGCA CUCCAU UGGAA \
CCG GAG GAC G CAUUGUCGU GAGGUG ACCUU U
ACGCCAGACGACGUGUCC AG^ A - UC C - GGUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-194-P4_5p |
mirBase accession | None |
Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
Star sequence |
Loc-Mir-194-P4_3p* |
mirBase accession | None |
Sequence |
34- CCAGUGGAGCUGCUGUUACCUG -56
Get sequence
|