| MirGeneDB ID | Lch-Mir-194-P4 |
|---|---|
| Family name | MIR-194 (all species) |
| Seed | GUAACAG |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-194-P2 |
| Orthologues | Aca-Mir-194-P4 Ami-Mir-194-P4 Bta-Mir-194-P4 Cfa-Mir-194-P4 Cja-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Dre-Mir-194-P4a Dre-Mir-194-P4b Eca-Mir-194-P4 Ete-Mir-194-P4 Gja-Mir-194-P4 Gmo-Mir-194-P4a Gmo-Mir-194-P4b Hsa-Mir-194-P4 Loc-Mir-194-P4 Mal-Mir-194-P4a Mal-Mir-194-P4b Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pab-Mir-194-P4 Pbv-Mir-194-P4 Rno-Mir-194-P4 Sha-Mir-194-P4 Spt-Mir-194-P4 Sto-Mir-194-P4 Tni-Mir-194-P4a Tni-Mir-194-P4b Xla-Mir-194-P4c Xla-Mir-194-P4d Xtr-Mir-194-P4 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126593.1: 2858400-2858460 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | CACAAUGAGACGGAGGAGGUACUCACCAAGUGUAACAGCAACUCCAUGUGGAAGAGAGACUCUGACUUUCCAGUGGAGUUGCUGUUAUGAUUGACAGGUACCUGGUGUCUUCAGGCCUACAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CACAAUGAGACGGAGGA--| CAC GU G GAGAGA GGUACU CAA GUAACAGCAACUCCAU UGGAA C CCAUGG GUU UAUUGUCGUUGAGGUG ACCUU U ACAUCCGGACUUCUGUGGU^ ACA AG - UCAGUC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-194-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
| Star sequence | Lch-Mir-194-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- CCAGUGGAGUUGCUGUUAUGAU -61
Get sequence
|
