MirGeneDB ID | Mmr-Mir-194-P4 |
Family name |
MIR-194 (all species) |
Seed |
GUAACAG |
Species |
Gray mouse lemur (Microcebus murinus) |
MiRBase ID |
|
Paralogues |
Mmr-Mir-194-P2
|
Orthologues |
Aca-Mir-194-P4
Ami-Mir-194-P4
Bta-Mir-194-P4
Cfa-Mir-194-P4
Cja-Mir-194-P4
Cpi-Mir-194-P4
Cpo-Mir-194-P4
Dno-Mir-194-P4
Dre-Mir-194-P4a
Dre-Mir-194-P4b
Eca-Mir-194-P4
Ete-Mir-194-P4
Gja-Mir-194-P4
Gmo-Mir-194-P4a
Gmo-Mir-194-P4b
Hsa-Mir-194-P4
Lch-Mir-194-P4
Loc-Mir-194-P4
Mal-Mir-194-P4a
Mal-Mir-194-P4b
Mml-Mir-194-P4
Mmu-Mir-194-P4
Mun-Mir-194-P4
Neu-Mir-194-P4
Oan-Mir-194-P4
Ocu-Mir-194-P4
Pab-Mir-194-P4
Pbv-Mir-194-P4
Rno-Mir-194-P4
Sha-Mir-194-P4
Spt-Mir-194-P4
Sto-Mir-194-P4
Tni-Mir-194-P4a
Tni-Mir-194-P4b
Xla-Mir-194-P4c
Xla-Mir-194-P4d
Xtr-Mir-194-P4
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165445.3_Mmur_3.0_genomic) |
CM007665.1: 7090898-7090955 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACCCAGGCCUCCAAUUGGCUCCCACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCUGGGGUGGGGACCUGUACCUACGAAGGAGGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
GACCCAGGCCUCCAAUU--| CU CU A G GUGCC
GG CCCACCCC GUAACAGCA CUCCAU UGGAA \
CC GGGUGGGG UAUUGUCGU GGGGUG ACCUU C
GAGGAGGAAGCAUCCAUGU^ AG UC C - GGUCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Mmr-Mir-194-P4_5p |
mirBase accession | None |
Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
Star sequence |
Mmr-Mir-194-P4_3p* |
mirBase accession | None |
Sequence |
36- CCAGUGGGGCUGCUGUUAUCUG -58
Get sequence
|