| MirGeneDB ID | Cja-Mir-194-P4 |
|---|---|
| Family name | MIR-194 (all species) |
| Seed | GUAACAG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-194-P2 |
| Orthologues | Aca-Mir-194-P4 Ami-Mir-194-P4 Bta-Mir-194-P4 Cfa-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Dre-Mir-194-P4a Dre-Mir-194-P4b Eca-Mir-194-P4 Ete-Mir-194-P4 Gja-Mir-194-P4 Gmo-Mir-194-P4a Gmo-Mir-194-P4b Hsa-Mir-194-P4 Lch-Mir-194-P4 Loc-Mir-194-P4 Mal-Mir-194-P4a Mal-Mir-194-P4b Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pab-Mir-194-P4 Pbv-Mir-194-P4 Rno-Mir-194-P4 Sha-Mir-194-P4 Spt-Mir-194-P4 Sto-Mir-194-P4 Tni-Mir-194-P4a Tni-Mir-194-P4b Xla-Mir-194-P4c Xla-Mir-194-P4d Xtr-Mir-194-P4 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021925.1: 118727525-118727582 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGGCCGGGCCUCCAGUUGGCUCCCACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACCGAUUCCAGUGGGGCUGCUGUUAUCUGGGGCGAGGGCUGGUACUCACGAAGGAGAGGGet precursor sequence |
| Structure | 10 20 30 40 50 GGGCCGGGCCUCCAGUU--| CCA CU A G GUGCC GGCUC CCCC GUAACAGCA CUCCAU UGGAA \ UCGGG GGGG UAUUGUCGU GGGGUG ACCUU C GGAGAGGAAGCACUCAUGG^ AGC UC C - AGCCA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), UGUG in loop |
| Mature sequence | Cja-Mir-194-P4_5p |
| mirBase accession | None |
| Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
| Star sequence | Cja-Mir-194-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- CCAGUGGGGCUGCUGUUAUCUG -58
Get sequence
|
