| MirGeneDB ID | Cja-Mir-194-P2 |
|---|---|
| Family name | MIR-194 (all species) |
| Seed | GUAACAG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-194-P4 |
| Orthologues | Aca-Mir-194-P2 Ami-Mir-194-P2 Bta-Mir-194-P2 Cfa-Mir-194-P2 Cli-Mir-194-P2 Cmi-Mir-194-P2 Cpi-Mir-194-P2 Eca-Mir-194-P2 Ete-Mir-194-P2 Gga-Mir-194-P2 Gja-Mir-194-P2 Hsa-Mir-194-P2 Laf-Mir-194-P2 Lch-Mir-194-P2 Mml-Mir-194-P2 Mmr-Mir-194-P2 Mmu-Mir-194-P2 Mun-Mir-194-P2 Oan-Mir-194-P2 Ocu-Mir-194-P2 Pab-Mir-194-P2 Pbv-Mir-194-P2 Rno-Mir-194-P2 Spt-Mir-194-P2 Sto-Mir-194-P2 Tgu-Mir-194-P2 Xla-Mir-194-P2a Xla-Mir-194-P2b Xtr-Mir-194-P2 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021933.1: 4784038-4784095 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCUUCUUGUAUGUUUAAUGGUGUUAUCAAGUGUAACAGCAACUCCAUGUGGACCGUGUACCAAUUUCCAGUGGAGACGCUGUUACUUCUGAUGGUUACCAACUUGCUACAAUAUAAAAGet precursor sequence |
| Structure | 10 20 30 40 50 UCUUCUUGUAUGUUUAA- -|UU AGU AA G CCGUGU UGGU G AUCA GUAACAGC CUCCAU UGGA \ ACCA U UAGU CAUUGUCG GAGGUG ACCU A AAAAUAUAACAUCGUUCA U^GG CUU CA - UUAACC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-194-P2_5p |
| mirBase accession | None |
| Sequence |
0- UGUAACAGCAACUCCAUGUGGA -22
Get sequence
|
| Star sequence | Cja-Mir-194-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CAGUGGAGACGCUGUUACUUC -58
Get sequence
|
