MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-194-P2

Family name MIR-194 (all species)
Seed GUAACAG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-194-1
Paralogues Ami-Mir-194-P4 
Orthologues Aca-Mir-194-P2  Bta-Mir-194-P2  Cfa-Mir-194-P2  Cja-Mir-194-P2  Cli-Mir-194-P2  Cmi-Mir-194-P2  Cpi-Mir-194-P2  Eca-Mir-194-P2  Ete-Mir-194-P2  Gga-Mir-194-P2  Gja-Mir-194-P2  Hsa-Mir-194-P2  Laf-Mir-194-P2  Lch-Mir-194-P2  Mml-Mir-194-P2  Mmr-Mir-194-P2  Mmu-Mir-194-P2  Mun-Mir-194-P2  Oan-Mir-194-P2  Ocu-Mir-194-P2  Pab-Mir-194-P2  Pbv-Mir-194-P2  Rno-Mir-194-P2  Spt-Mir-194-P2  Sto-Mir-194-P2  Tgu-Mir-194-P2  Xla-Mir-194-P2a  Xla-Mir-194-P2b  Xtr-Mir-194-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017708560.1: 13837764-13837819 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-194-P2)
Mir-194-P2 NW_017708560.1: 13837764-13837819 [+] UCSC
Mir-192-P2 NW_017708560.1: 13838078-13838138 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CGUUCAAGACUGACCAGCAGUACUUUCAAAUGUAACAGCAACUCCAUGUGGACUACGCUGACUUCCAGUGGAGAUGCUGUUACUUUUGACAGCCACUCACAGACAUGGAGCAGCUG
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Structure
        10         20         30        40        50        
CGUUCAAGACUGACCAGC-   A-| U     U         A      G    CUACG 
                   AGU  CU UCAAA GUAACAGCA CUCCAU UGGA     \
                   UCA  GA AGUUU CAUUGUCGU GAGGUG ACCU     C
GUCGACGAGGUACAGACAC   CC^ C     U         A      -    UCAGU 
    110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-194-P2_5p

mirBase accessionMIMAT0038212
Sequence
0- UGUAACAGCAACUCCAUGUGGAC -23
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Star sequence

Ami-Mir-194-P2_3p*

mirBase accessionMIMAT0038213
Sequence
34- CCAGUGGAGAUGCUGUUACUUU -56
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