Mir-194-P2b

MirGeneDB ID

Xla-Mir-194-P2b

Family name

MIR-194 (all species)

Seed

GUAACAG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-194-P2a Xla-Mir-194-P4c Xla-Mir-194-P4d

Orthologues

Aca-Mir-194-P2 Ami-Mir-194-P2 Bta-Mir-194-P2 Cfa-Mir-194-P2 Cja-Mir-194-P2 Cli-Mir-194-P2 Cmi-Mir-194-P2 Cpi-Mir-194-P2 Eca-Mir-194-P2 Ete-Mir-194-P2 Gga-Mir-194-P2 Gja-Mir-194-P2 Hsa-Mir-194-P2 Laf-Mir-194-P2 Lch-Mir-194-P2 Mml-Mir-194-P2 Mmr-Mir-194-P2 Mmu-Mir-194-P2 Mun-Mir-194-P2 Oan-Mir-194-P2 Ocu-Mir-194-P2 Pab-Mir-194-P2 Pbv-Mir-194-P2 Rno-Mir-194-P2 Spt-Mir-194-P2 Sto-Mir-194-P2 Tgu-Mir-194-P2 Xtr-Mir-194-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030733.1: 14167694-14167749 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGUAGAAGAGCCUGUAGUGUGUAUCAGGUGUAACAGCAACUCCAUGUGGACUUGUCCGUAUUCCAGUGGAGAUGCUGUUACUUUUGAUGGGCACUUACUGACCAGUGACAAGAG

Get precursor sequence

Structure

        10          20        30        40        50        
GGAGUAGAAGAGCCUGU--|    G       U         A      G    CUUGU 
                   AGUGU UAUCAGG GUAACAGCA CUCCAU UGGA     \
                   UCACG GUAGUUU CAUUGUCGU GAGGUG ACCU     C
GAGAACAGUGACCAGUCAU^    G       U         A      -    UAUGC 
    110       100        90        80        70         60

Deep sequencing

3' NTU

Motifs

Tissue expression

Eg	He	Ki	Re	St	St	St	St

Mature sequence

Xla-Mir-194-P2b_5p

mirBase accession

None

Sequence

0- UGUAACAGCAACUCCAUGUGGA -22

Get sequence

Star sequence

Xla-Mir-194-P2b_3p*

mirBase accession

None

Sequence

35- CAGUGGAGAUGCUGUUACUUU -56

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